AWKWARD ZOMBIE

Throw in some Super Mario Maker stacks to add to the chaos.

Bomb Voyage/Roll Play Dead/Step Mine/Mine Enemy:
Link sees an enemy coming at him. I'm thinking Moblin or the like. He pulls out a bomb and throws/rolls it at the enemy. The enemy accidentally steps on the bomb and slips on it. Bad guy goes airborne feet first and lands on his neck and dies while the bomb is kicked far away. Link winces then shrugs since that was what he was going for anyway. Visual might be funnier if the enemy breaks his neck stepping on the bomb, but then his lifeless corpse is tossed by the explosion shortly afterward.

Chain Link/Dampén Your Spirits/Grave Matters/Here Links Lie:
Link meets Dampé in one of his many incarnations. They have a pleasant chat/item trade/mini-game.
DAMPÉ: "Soo...Link is it? Strange coincidence. Here's something you might want to see."
Dampé leads Link to a row of graves. The headstones all say Link on them in various fonts. They're different ages and some bear carved likenesses of Link or items he uses such as the Master Sword. Link looks terrified. He looks over to see Dampé setting up a new Link headstone and digging a hole.
DAMPÉ: "What? Not saying you gotta jump in now. Just might as well get the digging out of the way."

Only Game in Town/Migrant Mayor/A Bridge to Sell You/Indentured Public Servant:
Various members of a town in Animal Crossing are having drinks together.
NOOK: "Look. I have an idea to fund our public works projects, clean up our town, stock our museum, and it won't cost us a thing."
CITIZEN: "How?"
NOOK: "We convince some random schmuck that they're the mayor now and tell them to fix everything."
The citizens look incredulous. Later...
Katie is greeted as the new mayor as she enters town. Given a big Mayor ribbon to wear as well as a shovel, watering can, and an axe.

How about Sonic, Tails and Knuckles too?

Or the three (in different outfits) ask "Where's Purple?", cut to Purple in Zelda's dress being kidnapped by Ganondrof.

Since Purple isn't in this one, for some reason. Only 3 Links allowed

I wrote this the day before the official announcement when the internet was abuzz with excitement over the possibility. I emailed it to Katie and copy pasted it the day you saw it.

Our Boy:
Seven fighters are battling in Smash. We see a pair of hands grip a sword. The battle continues. Fire builds along the blade. One of the fighters looks away from the scuffle.
SAMUS: "Do you guys hear something?"
The fire is building up.
BOWSER: "Could it be?"
MARTH: "Oh, no..."
Roy unleashes his Flare Blade from behind, blowing everyone up. We see him and the cast getting tossed in the air on fire. Roy is grinning like an idiot. No one else is amused.
ROY RECKLESSLY RETURNS!!
ROY: "Hey guys."

Cut to Ryu hitting Roy with a strong SRK.

Do I have to make like, a script or something?

Because I just have an idea:

The comic would be about Dai Gyakuten Saiban, and the impossibility of localizing it.

Sorta like a spiritual sequel to "Culture Shlock."

Though I suppose jokes like that only work once, and localization hasn't even been confirmed.

...Ehh?

Don't Counter On It
Little Mac and Marth are fighting. Mac throws a punch, which Marth counters.
As Marth goes to counter, he sees Ike has popped up and is preparing to counter.
The same thing happens and Ike sees Greninja behind Marth preparing to couner; Lucario is visible behind Ike, Shulk is behind Greninja etc.
[Some Time Later]
Cut to a bunch of characters who have counters sitting on a bench covered in bruises and Marth saying "OK, some of us are going to have to change and I'm not one of them."

Another possible title
Counterproductive

LETS HAVE A ROY COMIC
ROYS BACK!!!!!!!!!

Here it is

Marth is reading or something
roy just sneeks up and says "guess whos back......"

The fire emblem crew and some of Roys friends example Link welcomes Roy but Marth is still Marth

Roy starts crying with tears of joy

Roy sees Pit and has a bone to pick with him seeing that Pit replaced hin

How is that a joke?

Psychic Sidekick:
Phoenix Wright sees that Mia has been murdered.
WRIGHT: "Noooooo! She was a great boss!"
MAYA: "Don't worry. I can channel her spirit, enabling her to help you from beyond the grave."
WRIGHT: "You can channel spirits? I have an idea..."
In one of Wright's later murder cases Maya channels the murder victim's spirit.
VICTIM: "It was Bob."

I haven't played the Phoenix Wright games so there may be something wrong with this idea.

What if the person who was killed doesn't know the identity of the killer. The killer could use poison for the kill for example. Channeling spirits isn't a full proof solution.

X/Y Comic somehow involving Mega Ampharos and how fabulous they look. Either one-upping a diva of some sort, or like a Cockfighting Society fashion show, or maybe even a shampoo commercial.

All they did was add some white fur